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examples/GNMExample.py
examples/README.txt
examples/amber2dcd.py
examples/backbone_dihedral.py
examples/blocks.py
examples/dcd2xtc.py
examples/lipid_order_parameters.py
examples/make_MthK_tetramer.py
examples/membrane-composition.py
examples/membrane-leaflets.py
examples/membrane-parameters.py
examples/multimers-analysis.py
examples/nativecontacts.py
examples/pdb2charmm.py
examples/potential_profile.py
examples/radial_distribution_function.py
examples/rmsd.py
examples/rmsfit.py
examples/rmsfit_qcp.py
examples/rotational_autocorrelation.py
examples/schlitter_determ.py
examples/schlitter_quasiharmonic.py
examples/data/3ldd.pdb
examples/figures/adk_saltbridge_contact_analysis1.pdf
examples/figures/adk_saltbridge_contact_analysis1_matrix.pdf
examples/figures/backbone_dihedrals_ramachandran.pdf
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src/KDTree/KDTree.cpp
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src/dcd/dcd.c
src/dcd/dcdtimeseries.c
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src/dcd/include/correl.h
src/dcd/include/endianswap.h
src/dcd/include/fastio.h
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src/numtools/c_numpy.pxd
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